Obviously, the work you had done is not related to motor/transmission operation. You blow a piston, burn a valve, or have ANY INTERNAL transmission issue-your powertrain warranty will be useless with a tune. I want to remind everyone-NO MANUFACTURER OF A TUNE WILL STATE it does not leave a footprint even if you change it back to factory tune before taking it in.
Then in a questionable denial of claim, try going up against the WHOLE TEAM of Gm's Lawyers. One better have limitless resources.
In addition, if you feel manufacturers don't deny claims "because they can" spend time over on the Ford Forums and see how Ford is denying seemingly legitimate warranty work on their lousy diesel motors.